Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs12512060 | chr4:169155982 | G/T | 1.88E-8 | 509 | 37.03 | 40.1 | 3.1 | KM Plot |
KIRC | rs12525700 | chr6:40917717 | G/A | 5.97E-7 | 506 | 5 | 37.03 | 37.42 | KM Plot |
KIRC | rs12540545 | chr7:76038848 | A/G | 0 | 497 | 37.47 | 38.73 | 1.7 | KM Plot |
KIRC | rs12540573 | chr7:76039013 | A/C | 0 | 497 | 37.47 | 38.73 | 1.7 | KM Plot |
KIRC | rs12548111 | chr8:41910963 | A/G | 2.24E-8 | 501 | 37.18 | 45.37 | 1.8 | KM Plot |
KIRC | rs12571760 | chr10:33032200 | T/A | 3.31E-6 | 506 | 37.37 | 37.63 | 7.33 | KM Plot |
KIRC | rs12572066 | chr10:33065252 | A/G | 3.25E-6 | 506 | 37.37 | 37.5 | 7.33 | KM Plot |
KIRC | rs1267262 | chr7:40164430 | C/T | 5.72E-9 | 502 | 2.57 | 36.63 | 37.53 | KM Plot |
KIRC | rs12750945 | chr1:97804547 | T/C | 3.3E-7 | 499 | 37.03 | 46.85 | 11.83 | KM Plot |
KIRC | rs12809493 | chr12:29537437 | C/T | 3.18E-9 | 502 | 37.67 | 33.93 | 6.07 | KM Plot |
KIRC | rs12810064 | chr12:29516215 | A/G | 6.07E-9 | 505 | 37.67 | 37.25 | 6.07 | KM Plot |
KIRC | rs12810315 | chr12:29516092 | G/A | 5.46E-9 | 507 | 37.67 | 37.03 | 6.07 | KM Plot |
KIRC | rs12811201 | chr12:29544185 | G/A | 1.92E-9 | 500 | 37.73 | 33.93 | 6.07 | KM Plot |
KIRC | rs12811723 | chr12:29525390 | C/A | 5.58E-9 | 507 | 37.73 | 33.93 | 6.07 | KM Plot |
KIRC | rs12813520 | chr12:29525530 | T/C | 5.58E-9 | 507 | 37.73 | 33.93 | 6.07 | KM Plot |